Variant report
| Variant | rs13276608 |
|---|---|
| Chromosome Location | chr8:65681851-65681852 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:65680810..65683502-chr8:65684491..65686356,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs34522585 | 0.91[AMR][1000 genomes] |
| rs34795043 | 1.00[AFR][1000 genomes] |
| rs62519839 | 0.83[AMR][1000 genomes] |
| rs62519840 | 0.81[AMR][1000 genomes] |
| rs62519841 | 0.91[AMR][1000 genomes] |
| rs62519842 | 0.91[AMR][1000 genomes] |
| rs62519843 | 0.81[AMR][1000 genomes] |
| rs62519845 | 0.91[AMR][1000 genomes] |
| rs62519847 | 0.91[AMR][1000 genomes] |
| rs62521079 | 0.81[AMR][1000 genomes] |
| rs62521080 | 0.91[AMR][1000 genomes] |
| rs62521095 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs71529145 | 1.00[AFR][1000 genomes] |
| rs9650210 | 0.85[MEX][hapmap];0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | esv2761434 | chr8:65578467-66567678 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs13276608 | CYP7B1 | cis | parietal | SCAN |
| rs13276608 | RRS1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65671600-65682200 | Weak transcription | Esophagus | oesophagus |
