Variant report

Variant	rs13276873
Chromosome Location	chr8:8755833-8755834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10092694	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1062988	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12335245	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13250810	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13251163	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13254041	0.85[EUR][1000 genomes]
rs13263327	0.84[EUR][1000 genomes]
rs13274994	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13277397	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13278142	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28711612	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35400846	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35736441	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35820021	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36025219	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36045355	0.83[EUR][1000 genomes]
rs36061325	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3748141	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3762032	0.85[EUR][1000 genomes]
rs4840373	0.85[EUR][1000 genomes]
rs4841067	0.88[EUR][1000 genomes]
rs60822177	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6601267	0.99[EUR][1000 genomes]
rs7008835	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7013902	0.99[EUR][1000 genomes]
rs71514517	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73192215	0.84[EUR][1000 genomes]
rs73192227	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7844068	0.84[EUR][1000 genomes]
rs9942753	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv995047	chr8:8353662-8857913	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv831228	chr8:8608387-8790790	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1018828	chr8:8609880-8790660	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1022331	chr8:8610035-8787981	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv610190	chr8:8744240-8766881	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv1803827	chr8:8745741-8758058	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv1825921	chr8:8745741-8758058	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv1835162	chr8:8745741-8758058	Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv1838060	chr8:8749969-8765165	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	esv1814108	chr8:8749990-8769708	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv831229	chr8:8751523-8926235	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv972228	chr8:8752697-8759027	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8751600-8775000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:8751800-8756200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:8751800-8756800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:8751800-8756800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr8:8751800-8757800	Weak transcription	Small Intestine	intestine
6	chr8:8751800-8759000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:8752000-8756400	Weak transcription	Thymus	Thymus
8	chr8:8752000-8757000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:8752200-8756800	Weak transcription	Fetal Intestine Small	intestine
10	chr8:8752200-8758200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:8752200-8759000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:8752800-8756400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:8752800-8757400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:8752800-8775000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:8753000-8756400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:8753000-8757800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:8753200-8756200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr8:8753200-8756400	Weak transcription	Primary T cells from cord blood	blood
19	chr8:8753200-8756400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr8:8753200-8756600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr8:8753200-8756600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr8:8753200-8756800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr8:8753200-8757200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr8:8753400-8756400	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:8753400-8757000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr8:8755400-8756000	Enhancers	Fetal Lung	lung
27	chr8:8755600-8759000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:8755600-8761200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:8755800-8758200	Weak transcription	Fetal Heart	heart
30	chr8:8755800-8761600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links