Variant report

Variant	rs13278559
Chromosome Location	chr8:86295423-86295424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:19)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:19 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr8:86295373-86295833	K562	blood:	n/a	n/a
2	PML	chr8:86295391-86295876	K562	blood:	n/a	n/a
3	HMGN3	chr8:86295279-86295827	K562	blood:	n/a	n/a
4	RCOR1	chr8:86295216-86295789	K562	blood:	n/a	n/a
5	GATA2	chr8:86295272-86296137	K562	blood:	n/a	n/a
6	CEBPD	chr8:86295415-86295910	K562	blood:	n/a	n/a
7	TEAD4	chr8:86295240-86295919	K562	blood:	n/a	n/a
8	GABPA	chr8:86295400-86295756	K562	blood:	n/a	n/a
9	MAZ	chr8:86295290-86295713	K562	blood:	n/a	n/a
10	NFYB	chr8:86295343-86295664	K562	blood:	n/a	n/a
11	ZMIZ1	chr8:86295345-86295773	K562	blood:	n/a	n/a
12	GATA1	chr8:86295385-86296259	K562	blood:	n/a	n/a
13	TRIM28	chr8:86295321-86295897	K562	blood:	n/a	n/a
14	STAT5A	chr8:86295385-86295888	K562	blood:	n/a	n/a
15	TEAD4	chr8:86295403-86295855	K562	blood:	n/a	n/a
16	GATA1	chr8:86295120-86296021	PBDE	blood:	n/a	n/a
17	CEBPD	chr8:86295358-86295935	K562	blood:	n/a	n/a
18	POLR2A	chr8:86295108-86295886	PBDE	blood:	n/a	n/a
19	TAL1	chr8:86295228-86296191	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86294414..86297402-chr8:86373142..86375603,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11995864	1.00[MKK][hapmap]
rs13257749	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1022463	chr8:86257031-86547831	Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv831377	chr8:86263107-86444141	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86285200-86315400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:86295000-86295600	Strong transcription	Liver	Liver
3	chr8:86295000-86295600	Enhancers	Fetal Muscle Leg	muscle
4	chr8:86295000-86295800	Enhancers	Adipose Nuclei	Adipose
5	chr8:86295000-86296000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr8:86295000-86296400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:86295200-86296000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:86295400-86296200	Flanking Active TSS	K562	blood
9	chr8:86295400-86298800	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
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