Variant report

Variant	rs13278753
Chromosome Location	chr8:11570977-11570978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11569983..11572181-chr8:11572898..11575500,3	K562	blood:
2	chr8:11570475..11571255-chr8:11587947..11588507,3	MCF-7	breast:
3	chr8:11569396..11573726-chr8:11575318..11577927,4	MCF-7	breast:
4	chr8:11570409..11571041-chr8:11587922..11588483,3	MCF-7	breast:
5	chr8:11570486..11572575-chr8:11576211..11578134,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12546793	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12550668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13249227	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13259242	0.85[CHB][hapmap]
rs13282985	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35558975	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv6079	chr8:11564157-11573046	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11567200-11574400	Enhancers	Liver	Liver
2	chr8:11568000-11577600	Weak transcription	Gastric	stomach
3	chr8:11568200-11572200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:11568600-11571200	Enhancers	Pancreas	Pancrea
5	chr8:11569000-11572400	Enhancers	Stomach Mucosa	stomach
6	chr8:11569600-11571200	Weak transcription	Right Ventricle	heart
7	chr8:11570000-11574400	Enhancers	HepG2	liver
8	chr8:11570200-11571200	Bivalent Enhancer	Fetal Intestine Large	intestine
9	chr8:11570400-11571000	Enhancers	Fetal Intestine Small	intestine
10	chr8:11570400-11572400	Flanking Active TSS	Fetal Heart	heart
11	chr8:11570600-11571200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:11570600-11571400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
13	chr8:11570800-11571000	Flanking Active TSS	Ovary	ovary
14	chr8:11570800-11571000	Bivalent Enhancer	Psoas Muscle	Psoas
15	chr8:11570800-11571000	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
16	chr8:11570800-11571000	Flanking Active TSS	Right Atrium	heart
17	chr8:11570800-11571200	Bivalent Enhancer	Left Ventricle	heart
18	chr8:11570800-11571400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr8:11570800-11572200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr8:11570800-11572600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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