Variant report

Variant	rs13279104
Chromosome Location	chr8:61788144-61788145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:61786507..61789220-chr8:62034568..62037339,2	K562	blood:
2	chr8:61782330..61785349-chr8:61786739..61790519,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2272727	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[ASN][1000 genomes]
rs3793443	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890946	chr8:61726879-61802076	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1795586	chr8:61733174-61863906	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs13279104	CLVS1,RLBP1L1	cis	cerebellar cortex	BrainEAC
rs13279104	GGH	cis	parietal	SCAN
rs13279104	ASPH	cis	cerebellar cortex	BrainEAC
rs13279104	SNTN	trans	parietal	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61769800-61788400	Weak transcription	Fetal Brain Female	brain
2	chr8:61775200-61789000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr8:61775400-61790800	Weak transcription	Fetal Kidney	kidney
4	chr8:61778000-61789600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:61778400-61788600	Weak transcription	Pancreas	Pancrea
6	chr8:61778400-61789600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:61778600-61788600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:61778600-61792800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:61778800-61788600	Weak transcription	Fetal Lung	lung
10	chr8:61778800-61789800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:61780000-61788600	Weak transcription	HSMMtube	muscle
12	chr8:61780200-61788600	Weak transcription	Esophagus	oesophagus
13	chr8:61780200-61788600	Weak transcription	Placenta	Placenta
14	chr8:61780400-61788400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:61780400-61788800	Weak transcription	Gastric	stomach
16	chr8:61783800-61788400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr8:61784000-61789600	Enhancers	Brain Hippocampus Middle	brain
18	chr8:61784200-61789200	Enhancers	Fetal Thymus	thymus
19	chr8:61784400-61789400	Enhancers	Brain Cingulate Gyrus	brain
20	chr8:61784400-61789600	Enhancers	Brain Substantia Nigra	brain
21	chr8:61784600-61788400	Enhancers	Primary T cells from cord blood	blood
22	chr8:61784600-61788600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr8:61785000-61788800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr8:61785000-61789800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:61785000-61790600	Weak transcription	GM12878-XiMat	blood
26	chr8:61785000-61792400	Weak transcription	Primary B cells from cord blood	blood
27	chr8:61785200-61788400	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:61785200-61789800	Weak transcription	Fetal Intestine Small	intestine
29	chr8:61785400-61788200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr8:61785400-61788200	Weak transcription	Fetal Intestine Large	intestine
31	chr8:61785400-61788400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr8:61786000-61788600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr8:61786800-61789800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr8:61787000-61789800	Enhancers	Brain Anterior Caudate	brain
35	chr8:61787400-61788400	Weak transcription	Brain Germinal Matrix	brain
36	chr8:61787400-61789200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr8:61787600-61788400	Weak transcription	Brain Angular Gyrus	brain
38	chr8:61787600-61788800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr8:61787600-61789800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:61787800-61788800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr8:61787800-61789400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr8:61788000-61788200	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr8:61788000-61788800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:61788000-61788800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:61788000-61788800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr8:61788000-61789000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr8:61788000-61789000	Enhancers	Fetal Muscle Trunk	muscle
48	chr8:61788000-61790400	Enhancers	Primary B cells from peripheral blood	blood

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