Variant report

Variant	rs13280897
Chromosome Location	chr8:61871269-61871270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10109249	0.83[AFR][1000 genomes]
rs12678105	0.89[CHD][hapmap]
rs28694332	0.95[ASN][1000 genomes]
rs66624860	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv429919	chr8:61771472-61979873	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv890947	chr8:61815886-61882751	Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890948	chr8:61844766-61954970	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1008507	chr8:61857652-61872012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2764117	chr8:61858213-61879683	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61862800-61873800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:61862800-61879200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:61862800-61879600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:61863000-61874000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:61863600-61872000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:61864000-61884400	Weak transcription	Primary T cells from cord blood	blood
7	chr8:61867200-61872200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr8:61868200-61877600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr8:61868200-61878200	Weak transcription	Primary B cells from cord blood	blood
10	chr8:61869200-61873600	Weak transcription	Fetal Muscle Leg	muscle
11	chr8:61869200-61879800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:61869400-61877800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr8:61869600-61872000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:61870400-61871600	Enhancers	GM12878-XiMat	blood
15	chr8:61871000-61872800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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