Variant report

Variant	rs13281248
Chromosome Location	chr8:19935084-19935085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13257289	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv890633	chr8:19875100-19985382	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19931600-19936800	Enhancers	Placenta	Placenta
2	chr8:19932200-19936600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:19932400-19937000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:19933200-19936200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:19933800-19935600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:19933800-19936200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:19933800-19936600	Weak transcription	Lung	lung
8	chr8:19933800-19936600	Weak transcription	Right Atrium	heart
9	chr8:19934000-19936200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:19934000-19936200	Weak transcription	Spleen	Spleen
11	chr8:19934400-19935400	Weak transcription	Adipose Nuclei	Adipose
12	chr8:19934400-19936000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr8:19934400-19936600	Weak transcription	Left Ventricle	heart
14	chr8:19934400-19941400	Weak transcription	Right Ventricle	heart
15	chr8:19934800-19935600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:19934800-19936600	Weak transcription	Psoas Muscle	Psoas
17	chr8:19935000-19935400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:19935000-19935400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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