Variant report

Variant	rs13281661
Chromosome Location	chr8:130471646-130471647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130466558..130470190-chr8:130470932..130474396,4	K562	blood:
2	chr8:130471335..130473614-chr8:130473626..130476000,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10099692	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10108830	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11786929	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12681011	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1835842	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1897445	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1897446	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1897447	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35380634	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4382436	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7845244	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs970451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015611	chr8:130449321-130502086	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130459400-130471800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr8:130464600-130471800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:130465400-130472000	Genic enhancers	K562	blood
4	chr8:130470400-130473000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:130470400-130473400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:130470400-130473400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:130470600-130471800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:130470600-130471800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:130470600-130471800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:130470600-130471800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:130470600-130472000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:130470600-130472600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr8:130470800-130472000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:130470800-130472000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:130470800-130472000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr8:130471000-130472200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:130471000-130472800	Enhancers	Fetal Heart	heart
18	chr8:130471200-130473000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:130471200-130473200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:130471200-130473400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:130471400-130471800	Enhancers	HSMM	muscle
22	chr8:130471400-130472200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:130471400-130472200	Enhancers	HSMMtube	muscle
24	chr8:130471400-130472200	Enhancers	Osteobl	bone
25	chr8:130471400-130472800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:130471400-130472800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:130471400-130473200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr8:130471400-130473200	Enhancers	Dnd41	blood
29	chr8:130471400-130473200	Enhancers	NHDF-Ad	bronchial
30	chr8:130471400-130473800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr8:130471600-130471800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr8:130471600-130473000	Enhancers	Fetal Muscle Leg	muscle
33	chr8:130471600-130473400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr8:130471600-130473400	Enhancers	Fetal Thymus	thymus
35	chr8:130471600-130473600	Enhancers	Colon Smooth Muscle	Colon

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