Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10754074	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10754078	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10801249	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10921430	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1160521	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11801029	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1326851	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1581911	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1887189	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2025933	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2149175	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4657763	0.86[ASN][1000 genomes]
rs6664259	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6691652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6697313	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7339991	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7340124	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7543856	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs913121	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs990812	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3372415	chr1:193612172-193988265	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872832	chr1:193661626-193850407	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv872833	chr1:193681625-193774083	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv548662	chr1:193721143-193804209	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193757600-193759600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:193758200-193759600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:193758600-193759600	Enhancers	Fetal Brain Female	brain
4	chr1:193759200-193763400	Weak transcription	Fetal Intestine Large	intestine
5	chr1:193759200-193763400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:193759200-193763600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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