Variant report

Variant	rs13285092
Chromosome Location	chr9:136931152-136931153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136888457..136893834-chr9:136930854..136936517,11	MCF-7	breast:
2	chr9:136930668..136932603-chr9:137271043..137272791,2	MCF-7	breast:
3	chr9:136904109..136906442-chr9:136930032..136931682,2	K562	blood:
4	chr9:136907417..136909461-chr9:136930159..136932373,2	MCF-7	breast:
5	chr9:136928987..136935981-chr9:136998799..137005312,16	MCF-7	breast:
6	chr9:136889408..136891837-chr9:136929869..136932804,3	MCF-7	breast:
7	chr9:136930769..136932647-chr9:137027589..137030053,2	MCF-7	breast:
8	chr9:136855194..136860597-chr9:136929703..136933650,7	MCF-7	breast:
9	chr9:136930108..136935337-chr9:136999374..137002737,14	MCF-7	breast:
10	chr9:136888985..136892489-chr9:136929943..136933995,5	K562	blood:
11	chr9:136930118..136934023-chr9:136998387..137002829,10	K562	blood:
12	chr9:136916641..136919642-chr9:136929650..136932820,3	K562	blood:
13	chr9:136914158..136916486-chr9:136930935..136932761,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196363	Chromatin interaction
ENSG00000169925	Chromatin interaction
ENSG00000235138	Chromatin interaction
ENSG00000263897	Chromatin interaction
ENSG00000235106	Chromatin interaction
ENSG00000221676	Chromatin interaction
ENSG00000273249	Chromatin interaction
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13291082	1.00[AMR][1000 genomes]
rs13297632	1.00[AMR][1000 genomes]
rs13301584	1.00[AMR][1000 genomes]
rs34130575	1.00[AMR][1000 genomes]
rs34872806	1.00[AMR][1000 genomes]
rs35022457	1.00[AMR][1000 genomes]
rs35883079	1.00[AMR][1000 genomes]
rs7027238	1.00[AMR][1000 genomes]
rs71505268	1.00[AMR][1000 genomes]
rs71505269	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv894136	chr9:136839840-136938961	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv894137	chr9:136839840-136950691	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv894139	chr9:136863932-136950691	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv894141	chr9:136865879-136938961	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv466627	chr9:136870787-136938961	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv615774	chr9:136870787-136938961	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
14	nsv894146	chr9:136874066-136938961	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
15	nsv894147	chr9:136874066-136950691	Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
16	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
17	nsv894149	chr9:136874158-136950691	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
18	nsv894150	chr9:136887757-136944827	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
19	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
20	nsv466629	chr9:136893867-136938961	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
21	nsv615779	chr9:136893867-136938961	Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
22	esv1806029	chr9:136906752-136933825	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
23	nsv430110	chr9:136909280-136964450	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
24	nsv894152	chr9:136921015-136950691	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
25	nsv466630	chr9:136925451-136991034	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
26	nsv615780	chr9:136925451-136991034	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
27	esv1820789	chr9:136927657-136933825	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
28	esv1832063	chr9:136927657-136933825	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
29	esv1838849	chr9:136927657-136933825	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136926000-136931400	Enhancers	Fetal Heart	heart
2	chr9:136930000-136932200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr9:136930000-136932400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:136930400-136931800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:136930400-136932400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:136930600-136931200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:136930600-136931200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:136930600-136931200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr9:136930600-136931200	Flanking Active TSS	GM12878-XiMat	blood
10	chr9:136930600-136931400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr9:136930600-136931400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:136930600-136931600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:136930600-136931600	Flanking Active TSS	Brain Cingulate Gyrus	brain
14	chr9:136930600-136931600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:136930600-136931600	Flanking Active TSS	Colonic Mucosa	Colon
16	chr9:136930600-136931600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr9:136930600-136931600	Flanking Active TSS	Rectal Smooth Muscle	rectum
18	chr9:136930600-136931600	Flanking Active TSS	NHEK	skin
19	chr9:136930600-136931800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr9:136930600-136931800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:136930600-136931800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
22	chr9:136930600-136931800	Flanking Active TSS	Fetal Brain Female	brain
23	chr9:136930600-136931800	Flanking Active TSS	Dnd41	blood
24	chr9:136930600-136931800	Flanking Active TSS	NH-A	brain
25	chr9:136930600-136932000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:136930600-136932000	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr9:136930600-136932000	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr9:136930600-136932000	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr9:136930600-136932000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr9:136930600-136932000	Flanking Active TSS	HUVEC	blood vessel
31	chr9:136930600-136932000	Flanking Active TSS	Osteobl	bone
32	chr9:136930600-136932200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr9:136930600-136932200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:136930600-136932200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr9:136930600-136932200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr9:136930600-136932200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr9:136930600-136932200	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr9:136930600-136932200	Flanking Active TSS	Brain Hippocampus Middle	brain
39	chr9:136930600-136932200	Flanking Active TSS	Fetal Thymus	thymus
40	chr9:136930600-136932200	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr9:136930600-136932200	Flanking Active TSS	HMEC	breast
42	chr9:136930600-136932400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr9:136930600-136932400	Flanking Active TSS	Primary B cells from cord blood	blood
44	chr9:136930600-136932400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr9:136930600-136932400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
46	chr9:136930600-136932400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
47	chr9:136930600-136932400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:136930600-136932400	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr9:136930600-136932400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr9:136930600-136932600	Flanking Active TSS	Primary hematopoietic stem cells	blood

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