Variant report

Variant	rs1328733
Chromosome Location	chr6:70104848-70104849
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10945154	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1328718	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1360024	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4707025	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7744884	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7758355	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9346276	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9363997	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70081000-70108000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:70097200-70109000	Weak transcription	Fetal Brain Male	brain
3	chr6:70099200-70106000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:70099200-70108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:70099400-70108000	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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