Variant report

Variant	rs13287625
Chromosome Location	chr9:103302456-103302457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103286667..103289136-chr9:103299803..103302650,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35051712	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	esv3431185	chr9:103302357-103302583	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
2	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
3	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
4	chr9:103272600-103307000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:103273000-103303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
7	chr9:103278400-103306400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
9	chr9:103279600-103312000	Weak transcription	HSMM	muscle
10	chr9:103290000-103305200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:103290000-103306400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:103290400-103304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:103295600-103303200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:103296400-103304800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:103296800-103316600	Weak transcription	HSMMtube	muscle
16	chr9:103297000-103306400	Weak transcription	Brain Substantia Nigra	brain
17	chr9:103297000-103312800	Weak transcription	Brain Anterior Caudate	brain
18	chr9:103297200-103306800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:103297200-103307200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr9:103297400-103307200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:103297400-103312000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:103297800-103307000	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:103298400-103306600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:103299600-103307000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:103300000-103306400	Weak transcription	Brain Angular Gyrus	brain
26	chr9:103300000-103307200	Weak transcription	Pancreas	Pancrea
27	chr9:103300200-103327400	Weak transcription	Ovary	ovary
28	chr9:103300600-103305800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:103300800-103306000	Strong transcription	Fetal Brain Female	brain
30	chr9:103300800-103319800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:103301000-103306400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr9:103301200-103304000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:103301200-103305800	Strong transcription	H1 Cell Line	embryonic stem cell
34	chr9:103301600-103303000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:103301600-103305400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr9:103302000-103306600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:103302200-103303000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr9:103302200-103306600	Weak transcription	Fetal Stomach	stomach
39	chr9:103302400-103302600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr9:103302400-103303200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:103302400-103303200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr9:103302400-103303800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:103302400-103305400	Weak transcription	Brain Germinal Matrix	brain
44	chr9:103302400-103306400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr9:103302400-103307200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:103302400-103312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:103302400-103313000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links