Variant report

Variant	rs13288601
Chromosome Location	chr9:6426949-6426950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:6411987..6416661-chr9:6426661..6431000,5	K562	blood:
2	chr9:6413061..6414947-chr9:6424688..6427649,3	MCF-7	breast:
3	chr9:6417024..6418829-chr9:6426585..6429333,3	K562	blood:
4	chr9:6425850..6427575-chr9:6427743..6430006,2	K562	blood:

Variant related genes	Relation type
ENSG00000147854	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs67797327	1.00[AFR][1000 genomes]
rs67930252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv892160	chr9:6364449-6506038	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6414400-6427400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:6414600-6439400	Weak transcription	Colonic Mucosa	Colon
3	chr9:6414600-6449000	Weak transcription	Gastric	stomach
4	chr9:6414600-6449200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:6414600-6451800	Weak transcription	Esophagus	oesophagus
6	chr9:6414600-6477800	Weak transcription	Placenta	Placenta
7	chr9:6415400-6434000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:6415600-6430000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:6415600-6431000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:6415600-6441200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:6415600-6471400	Weak transcription	Aorta	Aorta
12	chr9:6415800-6442800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:6416000-6438400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr9:6416400-6429800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:6416400-6430000	Weak transcription	Spleen	Spleen
16	chr9:6416400-6430600	Weak transcription	Right Ventricle	heart
17	chr9:6416400-6449200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr9:6417400-6434400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:6417600-6430600	Weak transcription	HSMM	muscle
20	chr9:6417600-6437800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr9:6417800-6428600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr9:6417800-6428800	Weak transcription	K562	blood
23	chr9:6417800-6440000	Weak transcription	Fetal Brain Female	brain
24	chr9:6418000-6438200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:6418200-6427000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:6418200-6428600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr9:6418800-6430600	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:6419000-6428600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:6419000-6437000	Weak transcription	Fetal Brain Male	brain
30	chr9:6419200-6430600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:6419200-6433800	Weak transcription	Brain Substantia Nigra	brain
32	chr9:6419200-6437800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:6419400-6428400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr9:6419400-6428600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr9:6419400-6432200	Weak transcription	Brain Anterior Caudate	brain
36	chr9:6419400-6437400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr9:6419600-6427800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:6420000-6429800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:6420400-6430600	Weak transcription	Ovary	ovary
40	chr9:6420800-6428800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:6420800-6430400	Weak transcription	Small Intestine	intestine
42	chr9:6421000-6429200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:6421200-6427600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr9:6421200-6428200	Strong transcription	HepG2	liver
45	chr9:6421400-6449400	Weak transcription	Liver	Liver
46	chr9:6421800-6430200	Weak transcription	Left Ventricle	heart
47	chr9:6422200-6454000	Weak transcription	Fetal Lung	lung
48	chr9:6422400-6428200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:6422400-6428600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr9:6422600-6427800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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