Variant report

Variant	rs13288951
Chromosome Location	chr9:100508477-100508478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13296331	1.00[CHB][hapmap]
rs34053154	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34888442	1.00[AFR][1000 genomes]
rs7871887	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100504000-100514000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100505400-100509600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100507200-100513600	Enhancers	Fetal Intestine Small	intestine
4	chr9:100507800-100509000	Weak transcription	Fetal Intestine Large	intestine
5	chr9:100507800-100509600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:100508000-100509800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:100508200-100509400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:100508400-100509600	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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