Variant report

Variant	rs13290018
Chromosome Location	chr9:15086590-15086591
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13286758	0.83[EUR][1000 genomes]
rs13290110	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13302442	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35248799	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7031356	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv892623	chr9:15079847-15127129	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15084600-15086600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr9:15085000-15087200	Enhancers	Fetal Stomach	stomach
3	chr9:15085400-15088200	Enhancers	Fetal Lung	lung
4	chr9:15086000-15087200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:15086200-15086600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:15086200-15087000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr9:15086200-15087000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:15086200-15087600	Enhancers	NHDF-Ad	bronchial
9	chr9:15086400-15086800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr9:15086400-15087000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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