Variant report

Variant	rs13290380
Chromosome Location	chr9:101471003-101471004
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101455554..101459399-chr9:101467510..101471263,4	MCF-7	breast:
2	chr9:101462868..101464769-chr9:101469228..101471376,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv893614	chr9:101340316-101671634	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv893615	chr9:101356515-101678036	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv893616	chr9:101371017-101472921	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv825007	chr9:101467848-101476292	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3338088	chr9:101469131-101473529	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv819653	chr9:101469511-101472192	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3498543	chr9:101469881-101473129	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3498544	chr9:101469881-101473129	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3423249	chr9:101470556-101473104	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101469000-101471800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
2	chr9:101469200-101471800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr9:101469200-101471800	Enhancers	Liver	Liver
4	chr9:101469200-101472000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
5	chr9:101469200-101472000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr9:101469200-101472000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
7	chr9:101469200-101472000	Active TSS	Brain Angular Gyrus	brain
8	chr9:101469200-101472200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:101469400-101471200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:101469400-101472000	Active TSS	Brain Anterior Caudate	brain
11	chr9:101469600-101472000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr9:101469600-101472000	Bivalent/Poised TSS	A549	lung
13	chr9:101469800-101471200	Enhancers	Pancreas	Pancrea
14	chr9:101470000-101471200	Enhancers	Primary hematopoietic stem cells	blood
15	chr9:101470000-101471600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:101470000-101472200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
17	chr9:101470200-101471200	Bivalent Enhancer	Spleen	Spleen
18	chr9:101470400-101471600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
19	chr9:101470400-101471800	Active TSS	Psoas Muscle	Psoas
20	chr9:101470600-101471200	Enhancers	Gastric	stomach
21	chr9:101470600-101471600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:101470600-101471800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:101470600-101471800	Active TSS	HUVEC	blood vessel
24	chr9:101470800-101471200	Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr9:101470800-101471400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr9:101470800-101471400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
27	chr9:101470800-101471600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:101470800-101471600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:101470800-101471600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:101470800-101471600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr9:101470800-101471600	Bivalent/Poised TSS	Left Ventricle	heart
32	chr9:101470800-101471600	Active TSS	Right Atrium	heart
33	chr9:101470800-101471600	Bivalent/Poised TSS	Right Ventricle	heart
34	chr9:101470800-101471600	Bivalent/Poised TSS	NH-A	brain
35	chr9:101470800-101471800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:101470800-101471800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
37	chr9:101470800-101471800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
38	chr9:101470800-101471800	Bivalent Enhancer	Esophagus	oesophagus
39	chr9:101470800-101471800	Active TSS	Fetal Brain Female	brain
40	chr9:101470800-101471800	Active TSS	Pancreatic Islets	Pancreatic Islet
41	chr9:101470800-101471800	Bivalent/Poised TSS	NHLF	lung
42	chr9:101470800-101472000	Active TSS	Brain Cingulate Gyrus	brain
43	chr9:101470800-101472200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
44	chr9:101470800-101472400	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:101471000-101471200	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:101471000-101471200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:101471000-101471200	Bivalent/Poised TSS	Colonic Mucosa	Colon
48	chr9:101471000-101471200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
49	chr9:101471000-101471200	Bivalent/Poised TSS	Thymus	Thymus
50	chr9:101471000-101471200	Bivalent/Poised TSS	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links