Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1039337	1.00[CHB][hapmap]
rs10739162	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs10758968	0.94[CHB][hapmap]
rs10815870	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs10977060	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12235640	0.94[CHB][hapmap]
rs12235754	1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1359114	0.89[CHB][hapmap]
rs1500326	0.94[CHB][hapmap]
rs1500332	1.00[CHB][hapmap]
rs1500333	1.00[CHB][hapmap]
rs1535674	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs1535675	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2031214	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2031216	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2031219	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs2890778	0.81[AMR][1000 genomes]
rs3847294	0.89[CHB][hapmap]
rs3896024	0.89[CHB][hapmap]
rs3901934	0.89[CHB][hapmap]
rs4742500	0.83[ASN][1000 genomes]
rs4742502	0.89[CHB][hapmap];0.80[JPT][hapmap]
rs7036240	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7039560	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7042145	0.89[CHB][hapmap]
rs7043664	0.80[AMR][1000 genomes]
rs7849327	0.89[CHB][hapmap]
rs7849657	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7856760	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs904781	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv613287	chr9:8408453-8422302	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8389600-8451000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:8394000-8424400	Weak transcription	Fetal Lung	lung
3	chr9:8402400-8421000	Weak transcription	Brain Hippocampus Middle	brain
4	chr9:8402600-8448800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:8402800-8438000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:8405800-8438000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:8407800-8414600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:8408200-8429200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:8410400-8415000	Weak transcription	Ovary	ovary
10	chr9:8410400-8420200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:8410600-8415000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:8410600-8420000	Weak transcription	Brain Germinal Matrix	brain
13	chr9:8410600-8420400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:8410600-8436800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:8410800-8419800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:8410800-8420400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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