Variant report

Variant	rs13293464
Chromosome Location	chr9:79424845-79424846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:79423499..79425669-chr9:79425760..79428274,2	K562	blood:
2	chr9:79376487..79377278-chr9:79424771..79425462,2	MCF-7	breast:
3	chr9:79424817..79426017-chr9:79601845..79603257,16	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10121266	0.91[EUR][1000 genomes]
rs10121299	0.91[EUR][1000 genomes]
rs12235152	0.91[EUR][1000 genomes]
rs12237165	0.91[EUR][1000 genomes]
rs13295176	0.91[EUR][1000 genomes]
rs13295975	0.91[EUR][1000 genomes]
rs13297748	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35045046	0.87[AMR][1000 genomes]
rs35260044	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35441661	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35990857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57405993	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040363	chr9:79246366-79711737	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2758190	chr9:79365865-79673907	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759697	chr9:79365865-79673907	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79413400-79431800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:79414000-79425600	Weak transcription	Colon Smooth Muscle	Colon
3	chr9:79414000-79432200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:79418400-79451000	Weak transcription	Fetal Stomach	stomach
5	chr9:79420200-79425400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:79420400-79426800	Weak transcription	Aorta	Aorta
7	chr9:79420600-79431600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:79421000-79432000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:79422200-79425600	Weak transcription	HSMMtube	muscle
10	chr9:79423400-79426200	Enhancers	Brain Hippocampus Middle	brain
11	chr9:79423400-79426200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr9:79423600-79425600	Enhancers	Brain Angular Gyrus	brain
13	chr9:79423600-79428400	Enhancers	Brain Substantia Nigra	brain
14	chr9:79423800-79431600	Weak transcription	NHDF-Ad	bronchial
15	chr9:79424000-79429600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:79424200-79425600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr9:79424200-79431400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:79424600-79426200	Enhancers	Brain Cingulate Gyrus	brain
19	chr9:79424800-79425000	Enhancers	Brain Anterior Caudate	brain
20	chr9:79424800-79425200	Strong transcription	HSMM	muscle
21	chr9:79424800-79427000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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