Variant report

Variant	rs13294727
Chromosome Location	chr9:18509274-18509275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10511658	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10511659	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11789527	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11999281	0.94[AFR][1000 genomes]
rs12000949	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs12000950	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs12001004	0.81[AFR][1000 genomes]
rs12001288	0.82[YRI][hapmap]
rs12001382	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12001790	0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003118	0.81[YRI][hapmap];0.86[AFR][1000 genomes]
rs12003267	0.85[AFR][1000 genomes]
rs12005242	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs13283108	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288800	0.95[EUR][1000 genomes]
rs16936777	0.82[YRI][hapmap]
rs16936815	0.81[YRI][hapmap];0.94[AFR][1000 genomes]
rs1832746	1.00[ASN][1000 genomes]
rs34846596	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35245238	0.92[EUR][1000 genomes]
rs35518030	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35770069	0.93[EUR][1000 genomes]
rs36035302	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58526635	0.97[AFR][1000 genomes]
rs60199560	0.95[AFR][1000 genomes]
rs60561389	0.86[AFR][1000 genomes]
rs61162689	0.95[EUR][1000 genomes]
rs67925511	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7019792	0.84[AFR][1000 genomes]
rs7025447	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421011	0.84[AFR][1000 genomes]
rs73421013	0.84[AFR][1000 genomes]
rs73421023	0.94[AFR][1000 genomes]
rs73421030	0.97[AFR][1000 genomes]
rs73421031	0.94[AFR][1000 genomes]
rs73421035	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv892689	chr9:18485434-18537444	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv892690	chr9:18485434-18592374	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
10	esv3482057	chr9:18508765-18509320	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
11	esv3505687	chr9:18508780-18509305	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
12	esv3505686	chr9:18508799-18509310	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
13	esv3482055	chr9:18508820-18509300	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases
14	esv1006882	chr9:18508833-18509591	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
15	esv3505684	chr9:18508834-18509280	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18490400-18509400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:18495400-18513200	Weak transcription	HUVEC	blood vessel
3	chr9:18501600-18510800	Strong transcription	HSMM	muscle
4	chr9:18501600-18520400	Weak transcription	Fetal Stomach	stomach
5	chr9:18502200-18518800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:18502600-18509400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:18502800-18520400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:18504400-18509400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:18506800-18519800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:18508000-18509400	Weak transcription	NHDF-Ad	bronchial
11	chr9:18508600-18509400	Weak transcription	NH-A	brain
12	chr9:18508600-18511000	Weak transcription	Osteobl	bone

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