Variant report

Variant	rs13296849
Chromosome Location	chr9:136893970-136893971
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr9:136893782-136895257	HepG2	liver:	n/a	n/a
2	CEBPB	chr9:136893926-136893986	HepG2	liver:	n/a	n/a
3	HNF4G	chr9:136893769-136894152	HepG2	liver:	n/a	chr9:136893989-136894003 chr9:136893990-136894002 chr9:136893990-136894002 chr9:136893987-136894005 chr9:136893989-136894002 chr9:136893990-136894003 chr9:136893990-136894002 chr9:136893989-136894004 chr9:136893989-136894004 chr9:136893989-136894004 chr9:136893987-136894002 chr9:136893989-136894003
4	POLR2A	chr9:136893926-136893986	MCF10A-Er-Src	breast:	n/a	n/a
5	FOXA2	chr9:136893777-136894034	HepG2	liver:	n/a	n/a
6	POLR2A	chr9:136893892-136894442	HepG2	liver:	n/a	n/a
7	POLR2A	chr9:136893831-136894110	Raji	blood:	n/a	n/a
8	POLR2A	chr9:136893810-136895265	HepG2	liver:	n/a	n/a
9	POLR2A	chr9:136893817-136894033	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr9:136893817-136895149	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr9:136893965-136894148	U87	brain:	n/a	n/a
12	MXI1	chr9:136893800-136894055	HepG2	liver:	n/a	n/a
13	POLR2A	chr9:136893819-136893975	H1-hESC	embryonic stem cell:	n/a	n/a
14	MYC	chr9:136893853-136894058	HepG2	liver:	n/a	n/a
15	POLR2A	chr9:136892811-136895056	SK-N-MC	brain:	n/a	n/a
16	POLR2A	chr9:136893756-136895042	MCF-7	breast:	n/a	n/a
17	POLR2A	chr9:136893909-136894045	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr9:136893715-136894148	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr9:136893827-136895312	K562	blood:	n/a	n/a
20	POLR2A	chr9:136893750-136894090	SK-N-SH	brain:	n/a	n/a
21	MAFK	chr9:136893965-136894038	HepG2	liver:	n/a	n/a
22	HNF4A	chr9:136893824-136894098	HepG2	liver:	n/a	chr9:136893989-136894003 chr9:136893990-136894002 chr9:136893990-136894002 chr9:136893987-136894005 chr9:136893989-136894002 chr9:136893990-136894003 chr9:136893988-136894003 chr9:136893990-136894002 chr9:136893989-136894004 chr9:136893989-136894004 chr9:136893989-136894004 chr9:136893989-136894003

No.	Distal block	Cell Line	Cell type
1	chr9:136889586..136891747-chr9:136893297..136895999,4	MCF-7	breast:
2	chr9:136890645..136892420-chr9:136892471..136894163,2	K562	blood:
3	chr9:136889870..136892902-chr9:136892951..136894891,4	MCF-7	breast:
4	chr9:136888954..136894255-chr9:136931474..136935040,9	K562	blood:
5	chr9:136891192..136895857-chr9:136919376..136921931,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR5-3	chr9:136893948-136894376	ENSG00000235106
2	lnc-WDR5-3	chr9:136893948-136894637	ENSG00000235106
3	lnc-WDR5-3	chr9:136893948-136895445	NONHSAT135349
4	lnc-WDR5-3	chr9:136893893-136895581	ENSG00000235106.4

Variant related genes	Relation type
LINC00094	TF binding region
ENSG00000235106	Chromatin interaction
ENSG00000235138	Chromatin interaction
ENSG00000169925	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34293853	1.00[AMR][1000 genomes]
rs34389248	1.00[AMR][1000 genomes]
rs71505260	1.00[AMR][1000 genomes]
rs71505265	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv894135	chr9:136839840-136927657	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv894136	chr9:136839840-136938961	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv894137	chr9:136839840-136950691	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
14	nsv894139	chr9:136863932-136950691	Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
15	nsv894140	chr9:136865879-136927657	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
16	nsv894141	chr9:136865879-136938961	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
17	nsv894142	chr9:136870787-136906752	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
18	nsv466627	chr9:136870787-136938961	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	nsv615774	chr9:136870787-136938961	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
20	nsv1048571	chr9:136872166-137265444	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
21	nsv894143	chr9:136874066-136906752	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
22	nsv894144	chr9:136874066-136909261	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
23	nsv894145	chr9:136874066-136925451	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
24	nsv894146	chr9:136874066-136938961	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
25	nsv894147	chr9:136874066-136950691	Enhancers Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
26	nsv894148	chr9:136874066-137093168	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
27	nsv894149	chr9:136874158-136950691	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
28	nsv894150	chr9:136887757-136944827	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
29	nsv894151	chr9:136887757-137397609	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
30	nsv466629	chr9:136893867-136938961	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
31	nsv615779	chr9:136893867-136938961	Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136891000-136898200	Weak transcription	Small Intestine	intestine
2	chr9:136891400-136895800	Weak transcription	Aorta	Aorta
3	chr9:136891600-136894400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:136891600-136895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:136891600-136895800	Weak transcription	Left Ventricle	heart
6	chr9:136891600-136895800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:136891600-136895800	Weak transcription	HUVEC	blood vessel
8	chr9:136891600-136896000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:136891600-136896800	Weak transcription	A549	lung
10	chr9:136891600-136898200	Weak transcription	NHEK	skin
11	chr9:136891600-136899400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:136891600-136899400	Weak transcription	K562	blood
13	chr9:136891600-136899800	Weak transcription	Stomach Mucosa	stomach
14	chr9:136891600-136900200	Weak transcription	Right Atrium	heart
15	chr9:136891600-136904200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:136891600-136912400	Weak transcription	Psoas Muscle	Psoas
17	chr9:136891800-136894000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr9:136891800-136894000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:136891800-136894200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr9:136891800-136894600	Weak transcription	Colonic Mucosa	Colon
21	chr9:136891800-136894800	Strong transcription	NHLF	lung
22	chr9:136891800-136895000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr9:136891800-136895200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr9:136891800-136895800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:136891800-136895800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:136891800-136895800	Weak transcription	HSMM	muscle
27	chr9:136891800-136896000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr9:136891800-136896200	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:136891800-136896400	Weak transcription	Brain Substantia Nigra	brain
30	chr9:136891800-136896600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr9:136891800-136897000	Weak transcription	HSMMtube	muscle
32	chr9:136891800-136897800	Weak transcription	Primary B cells from cord blood	blood
33	chr9:136891800-136898000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:136891800-136898200	Weak transcription	GM12878-XiMat	blood
35	chr9:136891800-136901600	Strong transcription	Ovary	ovary
36	chr9:136891800-136902800	Weak transcription	Fetal Heart	heart
37	chr9:136891800-136904200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr9:136891800-136909200	Weak transcription	NH-A	brain
39	chr9:136891800-136912000	Weak transcription	HMEC	breast
40	chr9:136891800-136915200	Strong transcription	Fetal Intestine Small	intestine
41	chr9:136891800-136919400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr9:136892000-136894000	Weak transcription	Placenta	Placenta
43	chr9:136892000-136894000	Weak transcription	Gastric	stomach
44	chr9:136892000-136894200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr9:136892000-136894200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:136892000-136894200	Weak transcription	Duodenum Mucosa	Duodenum
47	chr9:136892000-136894200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr9:136892000-136894200	Weak transcription	Thymus	Thymus
49	chr9:136892000-136894400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr9:136892000-136894400	Weak transcription	Pancreas	Pancrea

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