Variant report

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10123263	0.83[ASN][1000 genomes]
rs1027720	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10732701	0.83[ASN][1000 genomes]
rs10746862	0.83[ASN][1000 genomes]
rs10868965	0.83[ASN][1000 genomes]
rs10868967	0.83[ASN][1000 genomes]
rs10868968	0.85[ASN][1000 genomes]
rs10868969	0.85[EUR][1000 genomes]
rs10868970	0.81[EUR][1000 genomes]
rs11142709	0.83[ASN][1000 genomes]
rs11142716	0.85[ASN][1000 genomes]
rs1329764	0.83[ASN][1000 genomes]
rs1329765	0.83[ASN][1000 genomes]
rs1329769	0.85[ASN][1000 genomes]
rs1329770	0.83[ASN][1000 genomes]
rs1360201	0.85[ASN][1000 genomes]
rs1360202	0.85[ASN][1000 genomes]
rs1360203	0.85[ASN][1000 genomes]
rs1411166	0.83[ASN][1000 genomes]
rs1411167	0.82[ASN][1000 genomes]
rs1504403	0.83[ASN][1000 genomes]
rs1854555	0.83[ASN][1000 genomes]
rs1854556	0.81[ASN][1000 genomes]
rs1854557	0.82[ASN][1000 genomes]
rs2134862	0.83[ASN][1000 genomes]
rs2174307	0.85[ASN][1000 genomes]
rs4744623	0.85[ASN][1000 genomes]
rs4744624	0.85[ASN][1000 genomes]
rs4745062	0.83[ASN][1000 genomes]
rs4745063	0.85[ASN][1000 genomes]
rs4745064	0.83[ASN][1000 genomes]
rs6560182	0.83[ASN][1000 genomes]
rs6560183	0.85[ASN][1000 genomes]
rs6560184	0.85[ASN][1000 genomes]
rs7019473	0.83[ASN][1000 genomes]
rs7022632	0.83[ASN][1000 genomes]
rs7028656	0.83[ASN][1000 genomes]
rs7038966	0.81[ASN][1000 genomes]
rs7038986	0.83[ASN][1000 genomes]
rs7040038	0.80[ASN][1000 genomes]
rs7042684	0.81[ASN][1000 genomes]
rs7043845	0.83[ASN][1000 genomes]
rs7469513	0.85[ASN][1000 genomes]
rs7862622	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv984559	chr9:73789685-73831841	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1329767	HBM	trans	parietal	SCAN
rs1329767	FICD	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73797800-73799400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:73798000-73798400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr9:73798000-73798400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:73798000-73799000	Enhancers	Primary hematopoietic stem cells	blood

Quick Search: