Variant report

Variant	rs13298532
Chromosome Location	chr9:85891266-85891267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr9:85891018-85891373	HL-60	blood:	n/a	chr9:85891225-85891238

Variant related genes	Relation type
ENSG00000237529	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10780583	0.84[ASN][1000 genomes]
rs12376739	0.94[CEU][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1323782	0.81[JPT][hapmap]
rs1323785	0.81[JPT][hapmap]
rs17086124	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv6586	chr9:85869828-85914812	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85856200-85910600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:85866200-85913000	Weak transcription	Aorta	Aorta
3	chr9:85882000-85895800	Weak transcription	Fetal Kidney	kidney
4	chr9:85882000-85895800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr9:85882200-85895800	Weak transcription	Gastric	stomach
6	chr9:85882200-85895800	Weak transcription	Ovary	ovary
7	chr9:85882200-85896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:85883200-85895000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:85884200-85912400	Weak transcription	HepG2	liver
10	chr9:85885200-85896600	Weak transcription	Brain Angular Gyrus	brain
11	chr9:85885400-85896200	Weak transcription	Spleen	Spleen
12	chr9:85885400-85896400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:85885600-85895200	Weak transcription	Psoas Muscle	Psoas
14	chr9:85887200-85895600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:85887200-85895800	Weak transcription	Fetal Heart	heart
16	chr9:85887200-85895800	Weak transcription	Right Ventricle	heart
17	chr9:85888600-85896200	Weak transcription	Fetal Brain Male	brain
18	chr9:85889400-85892600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:85890000-85895800	Weak transcription	Adipose Nuclei	Adipose
20	chr9:85890200-85896200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:85890200-85896200	Weak transcription	Fetal Stomach	stomach
22	chr9:85890400-85891600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr9:85890400-85896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:85890400-85902400	Weak transcription	Left Ventricle	heart
25	chr9:85890600-85895200	Weak transcription	Pancreas	Pancrea

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