Variant report

Variant	rs13299746
Chromosome Location	chr9:102633452-102633453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102623644..102625565-chr9:102631722..102634345,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10081715	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10739788	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739789	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10739790	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10760695	0.81[ASN][1000 genomes]
rs10760696	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10760697	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10819699	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10819701	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819702	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10819703	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10819704	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10988910	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10988912	0.96[ASN][1000 genomes]
rs10988913	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10988914	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10988916	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1131339	0.99[ASN][1000 genomes]
rs12353310	0.99[ASN][1000 genomes]
rs12555147	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12686676	0.99[ASN][1000 genomes]
rs2416878	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2416939	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4265238	0.87[ASN][1000 genomes]
rs4743366	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743367	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743368	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56004327	0.93[ASN][1000 genomes]
rs6478986	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7023690	0.96[ASN][1000 genomes]
rs7024182	0.96[ASN][1000 genomes]
rs7024294	0.96[ASN][1000 genomes]
rs7024419	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7029481	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7032301	0.96[ASN][1000 genomes]
rs7034892	0.96[ASN][1000 genomes]
rs7040578	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7042795	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7847479	0.96[ASN][1000 genomes]
rs7870031	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7871142	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102610400-102644000	Weak transcription	Aorta	Aorta
2	chr9:102615400-102644000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:102622600-102635600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:102628200-102636200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr9:102629800-102635600	Weak transcription	Hela-S3	cervix
6	chr9:102631400-102635400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:102631600-102635400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr9:102631600-102635600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:102633000-102635600	Weak transcription	NH-A	brain
10	chr9:102633000-102637200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:102633200-102636200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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