Variant report

Variant	rs13301531
Chromosome Location	chr9:16438433-16438434
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10511619	0.91[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12000878	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs12338207	0.81[CEU][hapmap]
rs13299763	0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1887619	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1887620	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1927637	0.85[CEU][hapmap]
rs41268967	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv524954	chr9:16432544-16446091	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16421800-16460400	Weak transcription	Aorta	Aorta
2	chr9:16426000-16442600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:16426200-16442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:16426200-16445200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:16427400-16442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:16428400-16441800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:16428400-16442000	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:16432600-16450600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:16432800-16442000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:16432800-16442000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:16433200-16442400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:16433200-16442400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:16433200-16442600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:16433400-16438800	Strong transcription	HSMM	muscle
15	chr9:16433800-16439000	Weak transcription	Fetal Intestine Small	intestine
16	chr9:16434600-16445200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:16435000-16440000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:16435000-16445400	Weak transcription	NH-A	brain
19	chr9:16435200-16439200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:16435600-16444000	Weak transcription	Gastric	stomach
21	chr9:16435800-16442400	Weak transcription	HSMMtube	muscle
22	chr9:16436000-16438600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:16436800-16442000	Weak transcription	A549	lung
24	chr9:16436800-16442800	Weak transcription	Placenta	Placenta
25	chr9:16437000-16438600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr9:16437000-16445200	Weak transcription	Fetal Lung	lung
27	chr9:16437000-16445800	Weak transcription	HUVEC	blood vessel
28	chr9:16437200-16438800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr9:16437200-16439000	Weak transcription	Fetal Intestine Large	intestine
30	chr9:16437200-16439400	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:16437400-16441800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:16437400-16441800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr9:16437400-16442000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:16437400-16442600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:16437400-16442600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:16437400-16445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:16437400-16445600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:16437400-16459200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:16437600-16439400	Weak transcription	NHDF-Ad	bronchial
40	chr9:16437600-16442000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr9:16437600-16442000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr9:16437600-16442400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr9:16437600-16442400	Weak transcription	Osteobl	bone
44	chr9:16437600-16442600	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr9:16437600-16442600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:16437600-16442600	Weak transcription	Ovary	ovary
47	chr9:16437600-16444400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:16437600-16445200	Weak transcription	NHLF	lung
49	chr9:16437600-16445400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:16437600-16450600	Weak transcription	Fetal Stomach	stomach

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