Variant report

Variant	rs1330580
Chromosome Location	chr10:26528580-26528581
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11015010	1.00[CEU][hapmap]
rs4111544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6482541	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7087663	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs74129130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7893528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7897227	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7914135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26523600-26528600	Strong transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26528200-26528800	Enhancers	Brain Germinal Matrix	brain
4	chr10:26528200-26531600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:26528200-26532200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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