Variant report

Variant	rs13306038
Chromosome Location	chr1:186641127-186641128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186631541..186633965-chr1:186639110..186642101,3	MCF-7	breast:
2	chr1:186640538..186641404-chr3:39148538..39149164,2	Hela-S3	cervix:
3	chr1:186638420..186641354-chr1:186642011..186644498,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114745	Chromatin interaction
ENSG00000168026	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv2762854	chr1:186547101-186847574	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv1816467	chr1:186639800-186643058	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv548400	chr1:186640704-186642331	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv872591	chr1:186640853-186643541	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv872592	chr1:186641058-186642856	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv548401	chr1:186641058-186643058	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv872593	chr1:186641058-186643058	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv872594	chr1:186641058-186643541	Strong transcription Genic enhancers Weak transcription	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186632800-186641400	Weak transcription	HUVEC	blood vessel
2	chr1:186632800-186642000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:186632800-186649000	Weak transcription	Fetal Lung	lung
4	chr1:186633000-186642200	Weak transcription	HMEC	breast
5	chr1:186633200-186642800	Weak transcription	NHEK	skin
6	chr1:186633200-186643600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:186637600-186641400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:186638200-186641400	Weak transcription	NH-A	brain
9	chr1:186638400-186641800	Weak transcription	Hela-S3	cervix
10	chr1:186638600-186642200	Weak transcription	A549	lung
11	chr1:186639000-186641400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:186639000-186642200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:186639000-186643600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:186639200-186641400	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:186639400-186645000	Weak transcription	NHDF-Ad	bronchial
16	chr1:186639400-186648400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr1:186639600-186644600	Weak transcription	Small Intestine	intestine
18	chr1:186639800-186641600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:186640200-186643200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr1:186640200-186643600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:186640200-186645000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr1:186640200-186646600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr1:186640200-186647800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:186640200-186647800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:186640800-186642000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr1:186640800-186647800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr1:186640800-186648000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr1:186640800-186648200	Weak transcription	Brain Angular Gyrus	brain
29	chr1:186640800-186649200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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