Variant report

Variant	rs13306334
Chromosome Location	chr1:169510139-169510140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:169453945..169456967-chr1:169506967..169510528,4	K562	blood:
2	chr1:169449555..169458933-chr1:169508181..169519645,22	MCF-7	breast:
3	chr1:169509458..169510965-chr1:169512972..169515829,2	MCF-7	breast:
4	chr1:169453945..169456967-chr1:169507929..169510528,3	K562	blood:
5	chr1:169477985..169481647-chr1:169506965..169511270,5	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C1orf112-4	chr1:169509951-169510205	NONHSAT007467
2	lnc-C1orf112-4	chr1:169509951-169510448	NONHSAT007468

No data

Variant related genes	Relation type
ENSG00000213062	Chromatin interaction
ENSG00000117479	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1028180	1.00[CEU][hapmap]
rs12022009	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12040141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12042044	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12733037	1.00[CEU][hapmap]
rs12752953	1.00[CEU][hapmap]
rs1533518	1.00[CEU][hapmap]
rs1533519	1.00[CEU][hapmap]
rs16862097	1.00[CEU][hapmap]
rs16862176	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16862180	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16862217	1.00[CEU][hapmap]
rs1883167	1.00[CEU][hapmap]
rs2037249	1.00[CEU][hapmap]
rs2271762	1.00[CEU][hapmap]
rs2301517	0.94[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3862937	1.00[CEU][hapmap]
rs6008	0.95[EUR][1000 genomes]
rs66737090	0.95[EUR][1000 genomes]
rs7551623	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9332623	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332624	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332628	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9332647	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9332658	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9332678	1.00[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169485400-169510600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:169496000-169515200	Strong transcription	Liver	Liver
3	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
4	chr1:169499000-169519000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
6	chr1:169504000-169515000	Strong transcription	HepG2	liver
7	chr1:169505200-169510200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:169505800-169511000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:169506000-169510800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
12	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:169508800-169510800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:169508800-169513200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:169509600-169515600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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