Variant report

Variant	rs13308724
Chromosome Location	chr7:39820849-39820850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RALA-1	chr7:39820783-39821484	XLOC_006058
2	lnc-RALA-1	chr7:39820742-39821484	NONHSAT120225

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv970820	chr7:39797964-39839303	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3348232	chr7:39810724-39822505	Weak transcription Strong transcription Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv5708	chr7:39814330-39855535	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv3358415	chr7:39819077-39826275	Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3446871	chr7:39819477-39826200	Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv981627	chr7:39819869-39837441	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv3434463	chr7:39820009-39825283	Strong transcription Weak transcription Genic enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv499730	chr7:39820097-39825207	Weak transcription Strong transcription Genic enhancers Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39785000-39831800	Weak transcription	Primary B cells from cord blood	blood
2	chr7:39794000-39830800	Weak transcription	Pancreas	Pancrea
3	chr7:39794200-39837400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr7:39794600-39830800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:39795400-39833400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:39798200-39831000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:39798400-39830800	Weak transcription	Fetal Intestine Small	intestine
8	chr7:39799000-39821200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr7:39801600-39831600	Weak transcription	Gastric	stomach
10	chr7:39801600-39833600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:39801800-39831000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:39801800-39831400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:39802000-39830800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:39802000-39835200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr7:39802600-39821200	Weak transcription	Adipose Nuclei	Adipose
16	chr7:39802600-39833000	Weak transcription	Dnd41	blood
17	chr7:39802800-39830800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:39802800-39835000	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:39803000-39824400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:39803400-39832000	Weak transcription	Fetal Thymus	thymus
21	chr7:39805200-39834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:39805400-39821000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:39805400-39831000	Weak transcription	Fetal Brain Female	brain
24	chr7:39805600-39823400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:39806000-39822800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr7:39807400-39830800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:39807800-39821200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:39807800-39830800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:39807800-39830800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:39807800-39830800	Weak transcription	Thymus	Thymus
31	chr7:39807800-39832800	Weak transcription	Brain Anterior Caudate	brain
32	chr7:39808200-39833000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:39808200-39833800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:39808400-39832800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr7:39808400-39833200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:39809400-39830800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:39810200-39831400	Weak transcription	Lung	lung
38	chr7:39810600-39837200	Weak transcription	Brain Substantia Nigra	brain
39	chr7:39811000-39835800	Weak transcription	Brain Germinal Matrix	brain
40	chr7:39811200-39831000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr7:39811400-39828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:39811400-39830800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:39812200-39823400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr7:39812400-39830200	Weak transcription	Aorta	Aorta
45	chr7:39812400-39830800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:39812400-39837400	Weak transcription	Fetal Intestine Large	intestine
47	chr7:39812400-39837600	Weak transcription	Spleen	Spleen
48	chr7:39813000-39822400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:39818400-39821600	Strong transcription	Fetal Stomach	stomach
50	chr7:39819800-39825600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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