Variant report

Variant	rs1330963
Chromosome Location	chr13:38949881-38949882
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11693	1.00[CHB][hapmap]
rs1330958	1.00[CHB][hapmap]
rs1330960	1.00[CHB][hapmap]
rs1330964	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs1330965	1.00[CHB][hapmap];0.95[YRI][hapmap]
rs1553300	1.00[CHB][hapmap]
rs1576610	1.00[CHB][hapmap]
rs1980984	1.00[CHB][hapmap]
rs2019520	1.00[CHB][hapmap]
rs2150468	1.00[CHB][hapmap]
rs2150469	1.00[CHB][hapmap]
rs2231323	1.00[CHB][hapmap]
rs2231328	1.00[CHB][hapmap]
rs2231330	1.00[CHB][hapmap]
rs2231332	1.00[CHB][hapmap]
rs2481877	1.00[CHB][hapmap]
rs2481879	1.00[CHB][hapmap]
rs2481880	1.00[CHB][hapmap]
rs2485783	1.00[CHB][hapmap]
rs2485785	1.00[CHB][hapmap]
rs2485786	1.00[CHB][hapmap]
rs2485789	1.00[CHB][hapmap]
rs2496466	1.00[CHB][hapmap]
rs2496473	1.00[CHB][hapmap]
rs2496475	1.00[CHB][hapmap]
rs2496476	1.00[CHB][hapmap]
rs4943583	1.00[CHB][hapmap]
rs4943584	1.00[CHB][hapmap]
rs4943585	1.00[CHB][hapmap];0.96[YRI][hapmap]
rs9285122	1.00[CHB][hapmap]
rs9532209	1.00[CHB][hapmap]
rs9548318	1.00[CHB][hapmap]
rs986773	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38942200-38951000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38949600-38951400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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