Variant report

Variant	rs13310704
Chromosome Location	chr7:83709827-83709828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10259999	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10263018	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10274042	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2189849	1.00[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28497496	0.82[AMR][1000 genomes]
rs28762136	0.82[AMR][1000 genomes]
rs4355720	0.90[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv508464	chr7:83698939-83714150	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv824196	chr7:83708277-83709998	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
4	esv3415551	chr7:83709191-83711239	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	esv8729	chr7:83709668-83710336	Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv2359570	chr7:83709681-83710388	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3436284	chr7:83709716-83710764	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
8	esv3476317	chr7:83709751-83710270	Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3497716	chr7:83709770-83710313	Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3497715	chr7:83709772-83710294	Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3497718	chr7:83709774-83710229	Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3497714	chr7:83709792-83710224	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3476316	chr7:83709800-83710260	Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3432074	chr7:83709807-83710241	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3476320	chr7:83709812-83710215	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3024	chr7:83709819-83710243	Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3497717	chr7:83709823-83710226	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83689800-83714400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:83690600-83714600	Weak transcription	NHDF-Ad	bronchial
3	chr7:83692200-83714600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:83698600-83710400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:83698600-83715400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:83703200-83715200	Weak transcription	NH-A	brain
7	chr7:83703600-83714400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:83703600-83715400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:83703800-83714400	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:83706000-83711200	Weak transcription	Dnd41	blood
11	chr7:83707400-83721600	Weak transcription	Fetal Brain Male	brain
12	chr7:83708000-83718000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:83708400-83711400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:83708400-83714400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:83708800-83715000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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