Variant report

Variant	rs13311816
Chromosome Location	chr7:140008025-140008026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12703714	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12703738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13247616	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34356756	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34681913	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35424975	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35659241	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67139464	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv824319	chr7:140004029-140009178	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv442070	chr7:140004043-140008466	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139999600-140008800	Weak transcription	Colonic Mucosa	Colon
2	chr7:140003400-140010000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:140004600-140010200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:140004600-140011200	Enhancers	HepG2	liver
5	chr7:140004600-140015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:140006000-140015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:140006600-140009200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:140006800-140009400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr7:140007000-140011600	Weak transcription	Primary B cells from cord blood	blood
10	chr7:140007400-140008200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:140007400-140008400	Enhancers	Colon Smooth Muscle	Colon
12	chr7:140007400-140010800	Enhancers	Ovary	ovary
13	chr7:140007600-140009200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr7:140007800-140008200	Enhancers	Duodenum Mucosa	Duodenum
15	chr7:140007800-140008200	Enhancers	Small Intestine	intestine
16	chr7:140007800-140009000	Enhancers	Fetal Intestine Small	intestine
17	chr7:140008000-140008200	Enhancers	A549	lung
18	chr7:140008000-140008400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:140008000-140008400	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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