Variant report

Variant	rs13313771
Chromosome Location	chr2:115919301-115919302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr2:115918126-115919369	H1-hESC	embryonic stem cell:	n/a	chr2:115918279-115918290 chr2:115918281-115918288 chr2:115919292-115919302 chr2:115918279-115918289 chr2:115918278-115918286 chr2:115918280-115918289
2	POLR2A	chr2:115919125-115919939	H1-neurons	neurons:	n/a	n/a
3	E2F6	chr2:115917958-115919412	H1-hESC	embryonic stem cell:	n/a	chr2:115918262-115918273 chr2:115919298-115919310 chr2:115918983-115918992 chr2:115918262-115918273 chr2:115919298-115919307 chr2:115919401-115919410
4	MAX	chr2:115918095-115919702	H1-hESC	embryonic stem cell:	n/a	chr2:115918279-115918290 chr2:115918281-115918288 chr2:115919292-115919302 chr2:115918279-115918289 chr2:115918278-115918286 chr2:115918280-115918289
5	E2F6	chr2:115918091-115919655	H1-hESC	embryonic stem cell:	n/a	chr2:115918262-115918273 chr2:115919298-115919310 chr2:115918983-115918992 chr2:115918262-115918273 chr2:115919298-115919307 chr2:115919616-115919626 chr2:115919401-115919410
6	POLR2A	chr2:115918876-115919374	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
DPP10-AS1	TF binding region
DPP10	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014713	chr2:115858427-116018055	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3404972	chr2:115918007-115920855	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3387285	chr2:115918207-115920805	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:115918000-115919800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:115918000-115920000	Active TSS	Brain Angular Gyrus	brain
3	chr2:115918000-115920000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr2:115918000-115920600	Active TSS	Rectal Smooth Muscle	rectum
5	chr2:115918000-115920800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr2:115918000-115920800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr2:115918000-115921200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr2:115918200-115919800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:115918200-115919800	Active TSS	Colonic Mucosa	Colon
10	chr2:115918200-115920000	Active TSS	Fetal Brain Female	brain
11	chr2:115918200-115920200	Active TSS	Gastric	stomach
12	chr2:115918200-115920400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr2:115918200-115920400	Active TSS	Brain Anterior Caudate	brain
14	chr2:115918200-115920400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr2:115918200-115920800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr2:115918200-115921200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr2:115918400-115919600	Bivalent/Poised TSS	Thymus	Thymus
18	chr2:115918400-115919800	Active TSS	Brain Substantia Nigra	brain
19	chr2:115918400-115920000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr2:115918400-115920000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:115918400-115920000	Active TSS	Cortex derived primary cultured neurospheres	brain
22	chr2:115918400-115920200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr2:115918400-115920600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:115918600-115919400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:115918600-115919400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr2:115918600-115919800	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr2:115918600-115919800	Active TSS	Fetal Intestine Large	intestine
28	chr2:115918600-115919800	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr2:115918600-115920000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr2:115918600-115920000	Active TSS	H9 Cell Line	embryonic stem cell
31	chr2:115918600-115920000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:115918600-115920000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:115918600-115920000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
34	chr2:115918600-115920000	Active TSS	Fetal Intestine Small	intestine
35	chr2:115918600-115920000	Active TSS	Fetal Kidney	kidney
36	chr2:115918600-115920200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr2:115918600-115920200	Active TSS	Brain Cingulate Gyrus	brain
38	chr2:115918600-115920600	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr2:115918600-115920800	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr2:115918600-115921000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr2:115918600-115921000	Active TSS	Pancreas	Pancrea
42	chr2:115918800-115919400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
43	chr2:115918800-115919400	Bivalent/Poised TSS	Lung	lung
44	chr2:115918800-115919600	Bivalent/Poised TSS	Right Ventricle	heart
45	chr2:115918800-115919600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
46	chr2:115918800-115919800	Active TSS	Brain Hippocampus Middle	brain
47	chr2:115918800-115919800	Bivalent/Poised TSS	Esophagus	oesophagus
48	chr2:115918800-115919800	Bivalent/Poised TSS	Fetal Stomach	stomach
49	chr2:115918800-115919800	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion
50	chr2:115918800-115919800	Active TSS	Right Atrium	heart

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