Variant report

Variant	rs1331391
Chromosome Location	chr9:78765951-78765952
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:78762924..78764913-chr9:78765056..78767232,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11144766	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17785192	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4745511	0.87[ASN][1000 genomes]
rs55835761	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831627	chr9:78651134-78817669	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv893474	chr9:78753324-78784325	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv893475	chr9:78753324-78817288	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78688000-78774000	Weak transcription	Left Ventricle	heart
2	chr9:78724000-78767000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:78725400-78766400	Weak transcription	Thymus	Thymus
4	chr9:78748400-78769200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr9:78751600-78773200	Weak transcription	Fetal Stomach	stomach
6	chr9:78752200-78772000	Weak transcription	Fetal Intestine Large	intestine
7	chr9:78752400-78773400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:78753600-78766800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:78753600-78773400	Weak transcription	Ovary	ovary
10	chr9:78757200-78776400	Weak transcription	Psoas Muscle	Psoas
11	chr9:78760600-78771800	Weak transcription	Primary T cells from cord blood	blood
12	chr9:78760600-78773800	Weak transcription	Pancreas	Pancrea
13	chr9:78761000-78766000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr9:78762400-78771800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr9:78762600-78773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:78762800-78766000	Weak transcription	Aorta	Aorta
17	chr9:78762800-78780200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr9:78763400-78776400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:78763800-78776200	Weak transcription	Right Atrium	heart
20	chr9:78765000-78766200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:78765000-78767200	Strong transcription	Fetal Intestine Small	intestine
22	chr9:78765000-78767200	Enhancers	Fetal Muscle Leg	muscle
23	chr9:78765400-78768600	Weak transcription	Adipose Nuclei	Adipose
24	chr9:78765600-78766000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr9:78765600-78766200	Enhancers	Primary B cells from cord blood	blood
26	chr9:78765600-78769200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr9:78765800-78766400	Enhancers	GM12878-XiMat	blood
28	chr9:78765800-78776000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links