Variant report

Variant	rs13314717
Chromosome Location	chr3:45817328-45817329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17078386	1.00[EUR][1000 genomes]
rs36014492	1.00[EUR][1000 genomes]
rs72890701	1.00[EUR][1000 genomes]
rs7614902	1.00[EUR][1000 genomes]
rs7628090	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv876735	chr3:45764246-45832052	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45813800-45817800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr3:45814000-45818200	Enhancers	Duodenum Mucosa	Duodenum
3	chr3:45814200-45820600	Enhancers	Fetal Intestine Large	intestine
4	chr3:45815200-45818400	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr3:45815400-45818200	Enhancers	Colonic Mucosa	Colon
6	chr3:45815600-45819000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr3:45815600-45823200	Genic enhancers	Fetal Intestine Small	intestine
8	chr3:45816600-45817800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:45816800-45820200	Weak transcription	Small Intestine	intestine
10	chr3:45817000-45818600	Enhancers	Fetal Lung	lung
11	chr3:45817000-45818600	Bivalent Enhancer	Fetal Stomach	stomach
12	chr3:45817200-45817400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:45817200-45817400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr3:45817200-45817400	ZNF genes & repeats	Pancreas	Pancrea
15	chr3:45817200-45817600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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