Variant report

Variant	rs13318906
Chromosome Location	chr3:133093153-133093154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1197288	0.87[YRI][hapmap]
rs1197293	0.87[YRI][hapmap]
rs9968091	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133080800-133098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:133083200-133099200	Weak transcription	Lung	lung
3	chr3:133088000-133093800	Weak transcription	HSMMtube	muscle
4	chr3:133089200-133094800	Weak transcription	Fetal Lung	lung
5	chr3:133089600-133093800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:133089800-133093800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:133090200-133093800	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:133090200-133093800	Weak transcription	Fetal Brain Female	brain
9	chr3:133090800-133093800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:133091600-133093600	Weak transcription	Brain Angular Gyrus	brain
11	chr3:133091600-133093600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:133091800-133093800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:133091800-133094000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr3:133092400-133096400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:133092600-133093800	Enhancers	Brain Germinal Matrix	brain
16	chr3:133092600-133094400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:133092600-133094400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:133092600-133096400	Enhancers	Fetal Brain Male	brain
19	chr3:133092800-133093400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:133092800-133095000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr3:133093000-133093400	Enhancers	HSMM	muscle
22	chr3:133093000-133093600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:133093000-133093800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:133093000-133094800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:133093000-133094800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:133093000-133095200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr3:133093000-133102400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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