Variant report

Variant	rs13320798
Chromosome Location	chr3:79002375-79002376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28567746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9831402	1.00[AMR][1000 genomes]
rs9858480	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78988000-79002400	Weak transcription	Aorta	Aorta
2	chr3:79001000-79012400	Weak transcription	Fetal Stomach	stomach
3	chr3:79001000-79024200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:79001600-79002400	Enhancers	Brain Germinal Matrix	brain
5	chr3:79001600-79002800	Enhancers	Fetal Lung	lung
6	chr3:79001800-79002600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr3:79002000-79002400	Enhancers	Brain Substantia Nigra	brain
8	chr3:79002000-79002600	Enhancers	Brain Anterior Caudate	brain
9	chr3:79002000-79003600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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