Variant report

Variant	rs13322089
Chromosome Location	chr3:78991405-78991406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr3:78990353-78991709	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
RN7SL751P	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10514741	0.81[AFR][1000 genomes]
rs13317939	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13325291	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480685	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1480686	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17016573	0.92[EUR][1000 genomes]
rs17016593	0.92[EUR][1000 genomes]
rs17016648	0.85[AFR][1000 genomes]
rs2271575	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28431826	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28564735	1.00[EUR][1000 genomes]
rs28611062	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57432814	0.83[AFR][1000 genomes]
rs58608513	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59931439	0.92[EUR][1000 genomes]
rs72904273	0.92[EUR][1000 genomes]
rs72904277	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72906141	0.92[EUR][1000 genomes]
rs72910208	0.80[AFR][1000 genomes]
rs72910211	0.84[AFR][1000 genomes]
rs9631526	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9822620	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829918	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9832632	0.81[AFR][1000 genomes]
rs9835586	1.00[EUR][1000 genomes]
rs9836486	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9839144	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9839572	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9842144	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853126	0.84[AFR][1000 genomes]
rs9858080	0.81[AFR][1000 genomes]
rs9868575	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9870336	0.84[AFR][1000 genomes]
rs9871957	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9876637	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9880690	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv966945	chr3:78990076-78992480	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78967200-79000600	Weak transcription	Fetal Kidney	kidney
2	chr3:78969600-79000600	Weak transcription	HepG2	liver
3	chr3:78978400-78992200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:78981600-78991600	Weak transcription	Fetal Heart	heart
5	chr3:78982400-79001800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:78986800-78992200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:78988000-78993600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:78988000-79002400	Weak transcription	Aorta	Aorta
9	chr3:78988200-78992800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:78988400-78992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:78989600-78991600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:78990000-78991600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:78990200-78991600	Enhancers	Osteobl	bone
14	chr3:78990400-78991600	Enhancers	NHEK	skin
15	chr3:78990400-78992000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:78990600-78991600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:78990600-78991600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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