Variant report

Variant	rs13322643
Chromosome Location	chr3:45848370-45848371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72890697	1.00[ASN][1000 genomes]
rs9843503	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45838400-45860000	Weak transcription	Gastric	stomach
2	chr3:45842000-45849400	Strong transcription	Dnd41	blood
3	chr3:45842400-45857400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:45842400-45859200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:45842400-45859800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:45842600-45854400	Weak transcription	Fetal Intestine Large	intestine
7	chr3:45843800-45849800	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:45843800-45856400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:45844000-45857400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:45845400-45853600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:45845400-45858800	Weak transcription	Brain Germinal Matrix	brain
12	chr3:45846600-45857400	Weak transcription	Fetal Brain Female	brain
13	chr3:45847000-45849000	Weak transcription	Brain Anterior Caudate	brain
14	chr3:45847600-45848400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:45847600-45848400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr3:45847600-45848400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:45847600-45848600	Enhancers	Primary T cells from cord blood	blood
18	chr3:45847600-45849800	Genic enhancers	Fetal Thymus	thymus
19	chr3:45847800-45848600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:45847800-45871400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:45848000-45850000	Enhancers	Brain Substantia Nigra	brain
22	chr3:45848000-45864400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:45848200-45850600	Enhancers	Thymus	Thymus

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