Variant report

Variant	rs13323989
Chromosome Location	chr3:59998499-59998500
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11920657	1.00[EUR][1000 genomes]
rs11921987	1.00[EUR][1000 genomes]
rs12106924	1.00[EUR][1000 genomes]
rs12107689	1.00[EUR][1000 genomes]
rs169840	1.00[EUR][1000 genomes]
rs17061699	1.00[EUR][1000 genomes]
rs17061728	1.00[EUR][1000 genomes]
rs1843539	1.00[EUR][1000 genomes]
rs2736795	1.00[EUR][1000 genomes]
rs2736803	1.00[EUR][1000 genomes]
rs6446096	1.00[EUR][1000 genomes]
rs73842464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648647	1.00[EUR][1000 genomes]
rs812444	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv876838	chr3:59952152-59999690	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590388	chr3:59957252-60018326	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59995600-59998800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:59996200-60000800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:59996800-60011600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:59997000-59999200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:59997000-59999600	Enhancers	Fetal Thymus	thymus
6	chr3:59997000-60000200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:59997200-59998600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr3:59997200-59999400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:59997200-59999600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr3:59997200-60000000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:59997200-60000200	Enhancers	Primary T cells fromperipheralblood	blood
12	chr3:59997200-60005800	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr3:59997400-59998800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:59997600-59998600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr3:59997600-59998800	Weak transcription	Thymus	Thymus
16	chr3:59997600-60000400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr3:59997600-60003400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:59997800-59998600	Enhancers	Dnd41	blood
19	chr3:59997800-60003000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:59998200-59998600	Enhancers	Primary T cells from cord blood	blood
21	chr3:59998400-59998600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:59998400-59998800	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr3:59998400-60002200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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