Variant report

Variant	rs1332599
Chromosome Location	chr9:103309558-103309559
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1000479	1.00[EUR][1000 genomes]
rs12006000	1.00[EUR][1000 genomes]
rs1930247	1.00[EUR][1000 genomes]
rs60526043	1.00[EUR][1000 genomes]
rs7856512	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
2	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
3	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
4	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
5	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
6	chr9:103279600-103312000	Weak transcription	HSMM	muscle
7	chr9:103296800-103316600	Weak transcription	HSMMtube	muscle
8	chr9:103297000-103312800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:103297400-103312000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:103300200-103327400	Weak transcription	Ovary	ovary
11	chr9:103300800-103319800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:103302400-103312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:103302400-103313000	Weak transcription	Fetal Lung	lung
14	chr9:103305200-103309600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:103307400-103311000	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:103307400-103311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:103307400-103311400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:103307400-103311600	Weak transcription	Brain Angular Gyrus	brain
19	chr9:103307400-103313000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr9:103307400-103316200	Weak transcription	Brain Substantia Nigra	brain
21	chr9:103307400-103316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:103307400-103316600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:103307400-103317400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:103307400-103323600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:103307400-103331800	Weak transcription	Gastric	stomach
26	chr9:103307400-103332200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr9:103307400-103341800	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:103307400-103347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:103307600-103313200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:103307600-103320600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:103307800-103311400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:103307800-103312400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:103307800-103312600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:103307800-103313600	Weak transcription	Fetal Stomach	stomach
35	chr9:103308000-103319400	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr9:103308000-103321400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:103308000-103321600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr9:103308000-103327200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:103308000-103340200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr9:103308200-103310800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:103308400-103311000	Weak transcription	Fetal Brain Female	brain
42	chr9:103308600-103311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:103308600-103345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:103309000-103310000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:103309000-103310600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr9:103309000-103311000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr9:103309000-103311000	Weak transcription	Brain Germinal Matrix	brain
48	chr9:103309200-103317800	Weak transcription	NH-A	brain
49	chr9:103309400-103318000	Strong transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links