Variant report

Variant	rs13328048
Chromosome Location	chr4:106465980-106465981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10010936	1.00[YRI][hapmap]
rs13327958	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1005011	chr4:106461690-106496019	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1013019	chr4:106461690-106501412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106448600-106466200	Weak transcription	Pancreas	Pancrea
2	chr4:106464600-106466400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:106464600-106466600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr4:106464600-106471200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:106465200-106466000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:106465400-106466000	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr4:106465600-106466000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr4:106465600-106466400	Enhancers	Fetal Intestine Small	intestine
9	chr4:106465600-106466600	Enhancers	Fetal Intestine Large	intestine
10	chr4:106465600-106466600	Enhancers	Fetal Kidney	kidney
11	chr4:106465600-106467400	Enhancers	Brain Hippocampus Middle	brain
12	chr4:106465800-106466000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:106465800-106466000	Enhancers	Small Intestine	intestine
14	chr4:106465800-106466400	Enhancers	Brain Anterior Caudate	brain
15	chr4:106465800-106466600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:106465800-106466600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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