Variant report

Variant	rs13329021
Chromosome Location	chr14:64704522-64704523
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64701764..64704749-chr14:64970192..64972112,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17766755	0.87[EUR][1000 genomes]
rs4365213	0.81[ASN][1000 genomes]
rs4986938	0.84[EUR][1000 genomes]
rs61984409	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13329021	ESR2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64688800-64710600	Weak transcription	Fetal Heart	heart
2	chr14:64689200-64705400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:64690200-64711200	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:64695800-64705800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:64696000-64705600	Weak transcription	Fetal Lung	lung
6	chr14:64696000-64705800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:64696200-64706000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:64696400-64708200	Weak transcription	Aorta	Aorta
9	chr14:64698400-64705600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr14:64698800-64716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:64699600-64708000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:64699800-64705600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:64699800-64705800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:64700000-64705800	Weak transcription	Lung	lung
15	chr14:64700000-64706400	Weak transcription	Right Ventricle	heart
16	chr14:64700400-64705200	Weak transcription	Dnd41	blood
17	chr14:64700800-64704800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr14:64702200-64707400	Enhancers	Thymus	Thymus
19	chr14:64702600-64705200	Weak transcription	Ovary	ovary
20	chr14:64702600-64705200	Weak transcription	Pancreas	Pancrea
21	chr14:64702600-64706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:64702600-64715400	Weak transcription	Fetal Stomach	stomach
23	chr14:64703200-64704800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:64703200-64706000	Enhancers	Primary B cells from peripheral blood	blood
25	chr14:64703200-64716800	Weak transcription	Brain Germinal Matrix	brain
26	chr14:64703400-64704800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:64703400-64705800	Weak transcription	Spleen	Spleen
28	chr14:64703600-64704800	Weak transcription	Fetal Thymus	thymus
29	chr14:64703800-64705200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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