Variant report

Variant	rs13329022
Chromosome Location	chr14:105930170-105930171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:105929879-105930243	K562	blood:	n/a	n/a
2	POLR2A	chr14:105930109-105930336	K562	blood:	n/a	n/a
3	POLR2A	chr14:105928893-105930632	SK-N-MC	brain:	n/a	n/a
4	ZNF263	chr14:105930158-105930326	HEK293-T-REx	kidney:	n/a	n/a
5	NR2F2	chr14:105929169-105930328	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:105930163..105933758-chr14:105934789..105938563,5	K562	blood:

Variant related genes	Relation type
MTA1	TF binding region
ENSG00000257270	Chromatin interaction
ENSG00000182979	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12887501	1.00[EUR][1000 genomes]
rs4983417	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105889200-105939800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:105889200-105939800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:105897800-105940000	Weak transcription	K562	blood
4	chr14:105898400-105931600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:105898400-105939800	Weak transcription	NHDF-Ad	bronchial
6	chr14:105902800-105937800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:105903200-105935400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:105904400-105939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr14:105906800-105931000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:105907000-105940600	Weak transcription	Small Intestine	intestine
11	chr14:105912000-105937000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:105915400-105931000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:105915400-105935000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr14:105915400-105936800	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr14:105915600-105937000	Strong transcription	Fetal Stomach	stomach
16	chr14:105916000-105931000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:105919000-105935200	Weak transcription	Stomach Mucosa	stomach
18	chr14:105923000-105930800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr14:105923400-105933800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr14:105923600-105933600	Weak transcription	GM12878-XiMat	blood
21	chr14:105925000-105930800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr14:105926000-105930400	Strong transcription	Fetal Muscle Leg	muscle
23	chr14:105926200-105931400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:105926200-105935800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:105926200-105937000	Strong transcription	Brain Germinal Matrix	brain
26	chr14:105926200-105937400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:105926400-105931000	Strong transcription	A549	lung
28	chr14:105926400-105931400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:105926400-105931400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:105926400-105931600	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:105926400-105932400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:105926400-105933600	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:105926400-105933600	Strong transcription	Gastric	stomach
34	chr14:105926400-105934200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:105926400-105934800	Strong transcription	Pancreas	Pancrea
36	chr14:105926400-105936600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr14:105926400-105936600	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:105926400-105937000	Strong transcription	Fetal Intestine Small	intestine
39	chr14:105926400-105937800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:105926400-105937800	Strong transcription	Fetal Brain Female	brain
41	chr14:105926400-105937800	Strong transcription	Thymus	Thymus
42	chr14:105926600-105931000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:105926600-105931200	Strong transcription	Placenta	Placenta
44	chr14:105926600-105931200	Strong transcription	Left Ventricle	heart
45	chr14:105926600-105931400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr14:105926600-105931400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:105926600-105931400	Strong transcription	Esophagus	oesophagus
48	chr14:105926600-105931400	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr14:105926600-105931400	Strong transcription	NHLF	lung
50	chr14:105926600-105931600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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