Variant report

Variant	rs13333280
Chromosome Location	chr16:30449410-30449411
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30439914..30444314-chr16:30447297..30452934,7	MCF-7	breast:
2	chr16:30448830..30450569-chr16:30645154..30647301,2	MCF-7	breast:
3	chr16:30449182..30451555-chr16:30495099..30497948,2	K562	blood:
4	chr16:30440123..30443030-chr16:30444445..30449448,5	MCF-7	breast:
5	chr16:30444848..30447442-chr16:30448703..30453292,5	MCF-7	breast:
6	chr16:30392016..30394268-chr16:30447241..30449596,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF771-1	chr16:30448905-30449478	ucscGeneNc_uc002dyl_1

No data

Variant related genes	Relation type
ENSG00000270466	Chromatin interaction
ENSG00000005844	Chromatin interaction
ENSG00000180096	Chromatin interaction
ENSG00000179958	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8052839	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065915	chr16:29967090-30486120	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
2	nsv542897	chr16:29967090-30486120	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	229 gene(s)	inside rSNPs	diseases
3	nsv1056897	chr16:30363683-30457504	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
4	nsv532531	chr16:30370550-30581820	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	113 gene(s)	inside rSNPs	diseases
5	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
6	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30442200-30451200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr16:30442200-30454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr16:30442200-30454400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr16:30442200-30454400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:30442200-30454600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr16:30442200-30455000	Weak transcription	Spleen	Spleen
7	chr16:30442200-30455600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:30442200-30456000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:30442400-30453400	Weak transcription	Fetal Intestine Small	intestine
10	chr16:30442400-30453800	Weak transcription	Brain Hippocampus Middle	brain
11	chr16:30442400-30454400	Weak transcription	Primary T cells from cord blood	blood
12	chr16:30442400-30454400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr16:30442400-30454400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr16:30442400-30454400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr16:30442400-30454400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr16:30442400-30454400	Weak transcription	K562	blood
17	chr16:30442400-30454800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr16:30442400-30454800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr16:30442400-30455000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr16:30442800-30454400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr16:30445800-30454400	Weak transcription	Thymus	Thymus
22	chr16:30446000-30453800	Weak transcription	Fetal Thymus	thymus
23	chr16:30446400-30454400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr16:30446400-30454600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr16:30446400-30454600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr16:30446600-30454200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr16:30446600-30454600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr16:30446600-30455000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr16:30446600-30455400	Weak transcription	HMEC	breast
30	chr16:30446600-30455400	Weak transcription	NHEK	skin
31	chr16:30447200-30454400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr16:30447200-30454800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr16:30448800-30449600	Enhancers	Stomach Mucosa	stomach
34	chr16:30448800-30454400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr16:30449000-30454400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr16:30449000-30454400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr16:30449000-30455600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr16:30449000-30455600	Weak transcription	Esophagus	oesophagus
39	chr16:30449200-30450400	Enhancers	HepG2	liver
40	chr16:30449200-30454600	Weak transcription	A549	lung
41	chr16:30449200-30455000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr16:30449400-30454400	Weak transcription	Gastric	stomach
43	chr16:30449400-30455000	Weak transcription	Left Ventricle	heart
44	chr16:30449400-30455000	Weak transcription	Pancreas	Pancrea

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