Variant report

Variant	rs1333353
Chromosome Location	chr13:38289937-38289938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12856733	0.92[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs12871022	0.85[CEU][hapmap]
rs1924289	0.92[CEU][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs1924290	0.80[EUR][1000 genomes]
rs2025407	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs2147124	0.92[CEU][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2181749	0.80[EUR][1000 genomes]
rs2957214	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs2957215	0.92[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs2957216	0.80[EUR][1000 genomes]
rs2957217	0.80[EUR][1000 genomes]
rs2957218	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs2985165	0.80[EUR][1000 genomes]
rs2985169	0.80[EUR][1000 genomes]
rs2985170	0.91[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs4284516	0.95[CEU][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4450268	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs4558282	0.80[EUR][1000 genomes]
rs4603421	0.90[JPT][hapmap];0.80[EUR][1000 genomes]
rs4943529	0.88[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4943531	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4943532	0.92[CEU][hapmap];0.82[CHB][hapmap];0.96[CHD][hapmap];0.92[JPT][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7317546	0.92[JPT][hapmap]
rs7320775	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7321114	0.83[EUR][1000 genomes]
rs7325911	0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7330896	0.91[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7335781	0.81[EUR][1000 genomes]
rs7336008	0.92[CEU][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs7336516	0.92[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7336526	0.92[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7337173	0.92[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs7337477	0.92[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs7338239	0.92[CEU][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs7991324	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9532096	0.92[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9532097	0.91[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9532098	0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9548012	0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9566245	0.92[CEU][hapmap];0.87[GIH][hapmap];0.83[TSI][hapmap]
rs9566246	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs9566247	0.92[CEU][hapmap];0.90[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs9566248	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs9566249	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs9566250	0.80[EUR][1000 genomes]
rs9566251	0.80[EUR][1000 genomes]
rs9576328	0.91[CEU][hapmap]
rs9576329	0.92[CEU][hapmap]
rs9576331	0.80[EUR][1000 genomes]
rs9576332	0.92[CEU][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs9576335	0.96[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9576338	0.96[CEU][hapmap];0.82[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9576344	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9594224	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs9594225	0.90[CEU][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs9594226	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs9594227	0.80[EUR][1000 genomes]
rs9603243	0.80[EUR][1000 genomes]
rs9603244	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs9603245	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs9603246	0.92[CEU][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38288600-38290000	Enhancers	HUVEC	blood vessel
2	chr13:38288600-38290200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr13:38288600-38292000	Enhancers	Osteobl	bone
4	chr13:38289000-38290200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:38289000-38291800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:38289200-38290200	Enhancers	Ovary	ovary
7	chr13:38289200-38290200	Enhancers	Hela-S3	cervix
8	chr13:38289200-38290200	Enhancers	NHDF-Ad	bronchial
9	chr13:38289200-38290400	Enhancers	HSMM	muscle
10	chr13:38289200-38291600	Enhancers	Fetal Lung	lung
11	chr13:38289200-38291800	Enhancers	NH-A	brain
12	chr13:38289200-38291800	Enhancers	NHLF	lung
13	chr13:38289400-38290000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:38289400-38290600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:38289400-38290600	Enhancers	Fetal Heart	heart
16	chr13:38289600-38290400	Enhancers	HSMMtube	muscle
17	chr13:38289600-38291600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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