Variant report

Variant	rs13333754
Chromosome Location	chr16:58620148-58620149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:58618360..58620567-chr16:58662077..58664476,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125107	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13329892	1.00[AMR][1000 genomes]
rs13335953	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28394663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28468502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28533067	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923409	1.00[AMR][1000 genomes]
rs9924494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926053	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938386	0.87[AMR][1000 genomes]
rs9941013	0.81[AFR][1000 genomes]
rs9941175	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv521338	chr16:58580519-58653838	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1794872	chr16:58619643-58678078	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58548800-58635600	Strong transcription	Dnd41	blood
2	chr16:58550000-58635800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:58550600-58625200	Strong transcription	Fetal Muscle Trunk	muscle
4	chr16:58550600-58635200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:58550800-58623200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:58550800-58625000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr16:58551000-58624000	Strong transcription	Adipose Nuclei	Adipose
8	chr16:58551000-58625200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr16:58551000-58625400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:58551000-58628800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr16:58551000-58629200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr16:58551000-58633400	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr16:58551000-58635000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr16:58551000-58635000	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr16:58551000-58635200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr16:58551000-58635400	Strong transcription	Fetal Thymus	thymus
17	chr16:58551200-58620400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr16:58551200-58628200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr16:58551200-58633400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr16:58551200-58634800	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr16:58551200-58635000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr16:58551200-58635000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr16:58551200-58635400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr16:58551200-58635600	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:58551400-58630000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr16:58551600-58635400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr16:58551800-58623200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr16:58551800-58634600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr16:58560600-58623000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr16:58576800-58635200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr16:58580400-58620600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr16:58582800-58635400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr16:58596800-58635400	Strong transcription	Placenta	Placenta
34	chr16:58597200-58627600	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr16:58597600-58635200	Strong transcription	Fetal Intestine Large	intestine
36	chr16:58597800-58625200	Strong transcription	A549	lung
37	chr16:58598000-58635400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr16:58598400-58624600	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr16:58598600-58621000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr16:58598600-58623200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr16:58598600-58625400	Strong transcription	Fetal Muscle Leg	muscle
42	chr16:58598600-58633800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr16:58598800-58624200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr16:58598800-58625200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr16:58599000-58622800	Strong transcription	Colon Smooth Muscle	Colon
46	chr16:58600600-58621400	Strong transcription	Ovary	ovary
47	chr16:58602000-58631600	Weak transcription	Stomach Mucosa	stomach
48	chr16:58602400-58625000	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr16:58602800-58622800	Strong transcription	Fetal Lung	lung
50	chr16:58602800-58627800	Strong transcription	Left Ventricle	heart

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