Variant report

Variant	rs13334216
Chromosome Location	chr16:48080860-48080861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12103017	1.00[AMR][1000 genomes]
rs13330953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334188	1.00[AMR][1000 genomes]
rs13335518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336274	1.00[AMR][1000 genomes]
rs28453927	1.00[AMR][1000 genomes]
rs28561423	1.00[AMR][1000 genomes]
rs28570519	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	esv15426	chr16:48078692-48084956	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48076200-48088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:48077200-48081400	Weak transcription	Spleen	Spleen
3	chr16:48077400-48081200	Weak transcription	Fetal Brain Male	brain
4	chr16:48077400-48086000	Weak transcription	Fetal Brain Female	brain
5	chr16:48077600-48081000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr16:48079200-48087200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:48079400-48087200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr16:48079800-48086800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr16:48080400-48081400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr16:48080800-48081200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr16:48080800-48083200	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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