Variant report

Variant	rs13334383
Chromosome Location	chr16:31284529-31284530
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31145517..31147775-chr16:31283695..31286612,2	MCF-7	breast:
2	chr16:31225418..31226936-chr16:31283356..31285312,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000052344	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13338129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28439473	1.00[AMR][1000 genomes]
rs59911590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61198590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532298	1.00[AMR][1000 genomes]
rs9925052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31277400-31284600	Weak transcription	HMEC	breast
2	chr16:31277400-31289000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr16:31277400-31290000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:31277600-31284800	Weak transcription	Primary B cells from cord blood	blood
5	chr16:31277600-31285000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr16:31277600-31290400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr16:31277600-31290400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr16:31277600-31290600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr16:31277800-31284800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:31278000-31286600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr16:31279200-31284800	Weak transcription	NHEK	skin
12	chr16:31279600-31288600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:31279600-31290400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr16:31280000-31288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:31281400-31284600	Weak transcription	A549	lung
16	chr16:31281400-31289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr16:31282200-31290000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr16:31282400-31284600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr16:31283600-31284800	Weak transcription	Spleen	Spleen
20	chr16:31283600-31286400	Weak transcription	Lung	lung
21	chr16:31283600-31286600	Weak transcription	Liver	Liver
22	chr16:31284000-31291200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr16:31284200-31286400	Weak transcription	Adipose Nuclei	Adipose
24	chr16:31284400-31287600	Weak transcription	Rectal Mucosa Donor 29	rectum

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