Variant report

Variant	rs1333445
Chromosome Location	chr13:39751789-39751790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11620043	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12870208	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1333440	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1333441	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1333443	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1930817	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1930818	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1981060	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981061	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3927576	0.83[AMR][1000 genomes]
rs3927577	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4471550	0.84[AMR][1000 genomes]
rs4474575	0.94[ASN][1000 genomes]
rs7982609	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983684	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989681	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7992745	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9315658	0.86[AFR][1000 genomes]
rs9315659	0.86[AFR][1000 genomes]
rs9315660	0.86[AFR][1000 genomes]
rs9315661	0.86[AFR][1000 genomes]
rs9532338	0.86[AFR][1000 genomes]
rs9989076	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1048391	chr13:39735088-39832358	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv3509263	chr13:39745852-39751850	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv1805490	chr13:39746260-39752044	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv1809236	chr13:39746260-39752044	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv1805783	chr13:39746260-39764128	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1809485	chr13:39747792-39752044	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv1811846	chr13:39747792-39752044	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv1814292	chr13:39747792-39752044	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39739000-39764000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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