Variant report

Variant	rs13336098
Chromosome Location	chr16:12591738-12591739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9936183	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1051242	chr16:12482972-12897243	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv542749	chr16:12482972-12897243	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1035581	chr16:12516946-12863700	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1051607	chr16:12522130-13347676	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv542750	chr16:12522130-13347676	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12545000-12594600	Weak transcription	Gastric	stomach
2	chr16:12554800-12596000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr16:12556600-12593200	Weak transcription	HSMMtube	muscle
4	chr16:12564800-12618400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr16:12567600-12604000	Weak transcription	Ovary	ovary
6	chr16:12571200-12594600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr16:12573200-12607400	Weak transcription	Aorta	Aorta
8	chr16:12573400-12618600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr16:12573800-12595800	Weak transcription	Thymus	Thymus
10	chr16:12578800-12605000	Weak transcription	Right Atrium	heart
11	chr16:12579000-12594400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr16:12579400-12592400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr16:12583400-12609000	Weak transcription	Adipose Nuclei	Adipose
14	chr16:12584200-12608800	Weak transcription	Primary T cells from cord blood	blood
15	chr16:12585400-12591800	Weak transcription	Primary B cells from cord blood	blood
16	chr16:12585400-12605000	Weak transcription	GM12878-XiMat	blood
17	chr16:12588200-12591800	Enhancers	Right Ventricle	heart
18	chr16:12588400-12592000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:12589200-12594600	Weak transcription	Esophagus	oesophagus
20	chr16:12589600-12594000	Weak transcription	Primary B cells from peripheral blood	blood
21	chr16:12590000-12592200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:12590000-12592200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr16:12590000-12592200	Enhancers	Fetal Thymus	thymus
24	chr16:12590400-12593800	Enhancers	Brain Hippocampus Middle	brain
25	chr16:12590400-12606600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr16:12590400-12609400	Weak transcription	Spleen	Spleen
27	chr16:12590800-12591800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr16:12590800-12591800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr16:12590800-12592200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr16:12590800-12593400	Enhancers	Brain Substantia Nigra	brain
31	chr16:12591000-12594400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr16:12591200-12591800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr16:12591200-12592000	Enhancers	Brain Anterior Caudate	brain
34	chr16:12591200-12592200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr16:12591200-12592200	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr16:12591200-12592400	Enhancers	Brain Cingulate Gyrus	brain
37	chr16:12591200-12593200	Enhancers	Brain Angular Gyrus	brain
38	chr16:12591200-12593400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr16:12591400-12591800	Enhancers	Fetal Muscle Leg	muscle
40	chr16:12591400-12592200	Enhancers	Pancreas	Pancrea
41	chr16:12591400-12592400	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr16:12591600-12591800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr16:12591600-12592000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:12591600-12592200	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr16:12591600-12592200	Enhancers	Lung	lung
46	chr16:12591600-12601000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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